PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01556g07007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 260aa    MW: 29418 Da    PI: 4.6626
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01556g07007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.82.1e-213578245
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              +i+n+ nrqvtfskRr g++KKA+EL++L++ae+a+i+ s +gk
  Peinf101Scf01556g07007.1 35 PINNQNNRQVTFSKRRLGLFKKASELCILTGAEIAIIVQSLKGK 78
                              79**************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-252686IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.532678IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-2427116IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-142848IPR002100Transcription factor, MADS-box
PfamPF003194.3E-203681IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-144863IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-146384IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MKSAINEAII DLLSYTMNVN TMKKTQGRRK IAIQPINNQN NRQVTFSKRR LGLFKKASEL  60
CILTGAEIAI IVQSLKGKRI FAFGHSSVDA VIDRYVNGKS LSTEVDKFDN VQQNNQYYSQ  120
ICRELEAEKQ KKEIIEELMI SNDNNDGGFW WDEEPTNDMG IEELGEFVSA LEELKKNVTR  180
RADELSMING SSMPTSSLNS SSINIARFGI VDQYLNEAVN YCASIVPFDF DHQGGDDSSD  240
RSELSKIGDY LNDYMSLFPY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231377.11e-100PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLK4B2N71e-100K4B2N7_SOLLC; Uncharacterized protein
STRINGSolyc01g106700.2.13e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-31AGAMOUS-like 62